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Analysis of EEG signal using principal component analysis (PCA)
Walczysko, Martin ; Vítek, Martin (referee) ; Rychtárik, Milan (advisor)
In the beginning of the bachelor’s thesis is dealt with the measurement of EEG signals in the laboratory of Department of Biomedical Engineering at FEEC BRNO and following processing in programming environment Matlab. The aim of the thesis tries to demonstrate the analysis of EEG dates using the principal components analysis. There are shown the using possibilities for reducing the dimension of input’s dates. It is considered the lay-out of electrodes, the duration of recording or existing artifact. There is also conducted a study of highlighting the abnormalities contained in EEG in order to easier detection. In the end are outlined the possibilities of using the ICA for analysis of EEG and eventually for removing unwanted artifacts.
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Visualization of spectroscopic data using Principal Component Analysis
Šrenk, David ; Žák, Libor (referee) ; Pořízka, Pavel (advisor)
This diploma thesis deals with using laser-induced breakdown plasma spectroscopy for determining the elemental structure of unknown samples. It was necessary to design an appropriate method to qualify material by laser-induced emission spectrum. Pretreatment of data and using a variety of chemometrics methods had to be done in order to qualify the structure of elements. We achieved a required solution by projecting the data to a new PCA space, creating clusters and computing the Euclidean distance between each cluster. The experiment in the practical part was set to detect an interface of two elements. We created a data file simulating the ablation on the interface. This data set was gradually processed applying a mathematical-chemical-physical view. Several data procedures have been compiled: approximation by Lorenz, Gauss and Voigt function and also a pretreatment method such as the detection of outliers, standardization by several procedures and subsequent use of principal components analysis. A summarization of processes for input data is fully described in the thesis.
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Analysis of male sex pheromone of different population of tropic fruit fly Ceratitis capitata (Diptera, Tephritidae)
Ježková, Zuzana ; Bosáková, Zuzana (advisor) ; Jirošová, Anna (referee)
The Ceratitis capitata is a very important agricultural pest, whose reproduction behaviour is controled by chemical signals. Males initiate mating by creating leks, where they release sexual pheromones to attract females. The main goal of this diploma thesis was to determine the influence of host plants on the composition of male sex-pheromones C. capitata and to compare emanations of wild males with those originating from laboratory population. We studied the chemical composition of volatiles, released by calling males C. capitata from laboratory and two wild populations, using two-dimensional gas chromatography with time-of-flight mass spectrometric detection (GC×GC-TOFMS), gas chromatography with electroantennographic and flame ionization detection (GC-EAD-FID). All data were statistically analyzed by multivariate data analyses. Significant differences were observed in the quantitative and qualitative composition of the chemical emanations among males from the three populations. The GC-EAD-FID analyses revealed fourteen antenally active compounds with a possible behavioral function. Isomenthone, geraniol, bornyl acetate, geranyl acetone and ethyl octanoate were newly identified antenally active compounds of C. capitata male sex pheromone. Statistical analyses indicated that males and females of...
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Behavioural patterns exhibited by three populations of house mouse ( Mus musculus lato) in five-tests battery: the effects of subspecies and commensal way of life
Voráčková, Petra ; Frynta, Daniel (advisor) ; Macholán, Miloš (referee)
The term "personality" nowadays occurs more often not only in psychological studies of humans but also in animal studies. Studying of personality help us to define the behavioural characteristics which can vary within the age, sexes, species or enviroments. Behavioral experiments are used to detect these behavioral patterns and they can divide the animals into the different groups. The subject of our research became three populations of house mouse (Mus musculus sensu lato) which we tested in a series of experiments involving free exploration, forced exploration, hole- board test, test of vertical activity and Elevated plus-maze. These experiments should reveal wheter the mice differ in their behaviour through the context of sex, comensalism or subspecies. We found (with in excepcion of one test) that intrapopulation variability differences are very small but interpopulation differences purely increase in the cas of comensalism and effects of subspecies. Keywords: Mus musculus, comensalism, open fieldtest, Elevated plus-maze, Principal Component Analysis (PCA)
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Use of comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometric detection for metabolomic analysis of Gloeophyllum trabeum fungus
Kuchler, Ondřej ; Sobotníková, Jana (advisor) ; Kozlík, Petr (referee)
Fungus Gloeophyllum trabeum (Agaricomytes: Gloeophyllates) is a brown rot wood-decay fungus which produces a vast spectrum of volatile secondary metabolites. Scientific publications state, that one of the metabolites produced by G. trabeum, can be the substance (3Z,6Z,8E)-dodecatrien-1-ol. This chemical substance is also the main component of trail-following pheromone of Rhinotermitidae termite family. In this diploma thesis, I was trying to verify whether various species of G. trabeum are in fact capable of producing the substance (3Z,6Z,8E)-dodecatrien-1-ol. I was also focusing on the effects of saccharides, present in nutrient solutions, on quantitative and qualitative change in composition of volatile secondary metabolites produced by G. trabeum. The saccharides I used for my research were - maltose, fructose, sucrose, xylose, and mannose. The analysis was made by using comprehensive two-dimensional gas chromatography separation technique with time-of-flight mass spectrometric detection (GC×GC-TOFMS). During my research I discovered that one of obtained species of G. trabeum can produce substance (3Z,6Z,8E)-dodecatrien-1-ol, but only under specific conditions. It is produced when cultivating on Petri dishes on agar - cellulose growth media. The measurement was further validated by...
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Use of comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometric detection for metabolomic analysis of Gloeophyllum trabeum fungus
Kuchler, Ondřej ; Sobotníková, Jana (advisor) ; Kozlík, Petr (referee)
Fungus Gloeophyllum trabeum (Agaricomytes: Gloeophyllates) is a brown rot wood-decay fungus which produces a vast spectrum of volatile secondary metabolites. Scientific publications state, that one of the metabolites produced by G. trabeum, can be the substance (3Z,6Z,8E)-dodecatrien-1-ol. This chemical substance is also the main component of trail-following pheromone of Rhinotermitidae termite family. In this diploma thesis, I was trying to verify whether various species of G. trabeum are in fact capable of producing the substance (3Z,6Z,8E)-dodecatrien-1-ol. I was also focusing on the effects of saccharides, present in nutrient solutions, on quantitative and qualitative change in composition of volatile secondary metabolites produced by G. trabeum. The saccharides I used for my research were - maltose, fructose, sucrose, xylose, and mannose. The analysis was made by using comprehensive two-dimensional gas chromatography separation technique with time-of-flight mass spectrometric detection (GC×GC-TOFMS). During my research I discovered that one of obtained species of G. trabeum can produce substance (3Z,6Z,8E)-dodecatrien-1-ol, but only under specific conditions. It is produced when cultivating on Petri dishes on agar - cellulose growth media. The measurement was further validated by...
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Visualization of spectroscopic data using Principal Component Analysis
Šrenk, David ; Žák, Libor (referee) ; Pořízka, Pavel (advisor)
This diploma thesis deals with using laser-induced breakdown plasma spectroscopy for determining the elemental structure of unknown samples. It was necessary to design an appropriate method to qualify material by laser-induced emission spectrum. Pretreatment of data and using a variety of chemometrics methods had to be done in order to qualify the structure of elements. We achieved a required solution by projecting the data to a new PCA space, creating clusters and computing the Euclidean distance between each cluster. The experiment in the practical part was set to detect an interface of two elements. We created a data file simulating the ablation on the interface. This data set was gradually processed applying a mathematical-chemical-physical view. Several data procedures have been compiled: approximation by Lorenz, Gauss and Voigt function and also a pretreatment method such as the detection of outliers, standardization by several procedures and subsequent use of principal components analysis. A summarization of processes for input data is fully described in the thesis.
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Behavioural patterns exhibited by three populations of house mouse ( Mus musculus lato) in five-tests battery: the effects of subspecies and commensal way of life
Voráčková, Petra ; Frynta, Daniel (advisor) ; Macholán, Miloš (referee)
The term "personality" nowadays occurs more often not only in psychological studies of humans but also in animal studies. Studying of personality help us to define the behavioural characteristics which can vary within the age, sexes, species or enviroments. Behavioral experiments are used to detect these behavioral patterns and they can divide the animals into the different groups. The subject of our research became three populations of house mouse (Mus musculus sensu lato) which we tested in a series of experiments involving free exploration, forced exploration, hole- board test, test of vertical activity and Elevated plus-maze. These experiments should reveal wheter the mice differ in their behaviour through the context of sex, comensalism or subspecies. We found (with in excepcion of one test) that intrapopulation variability differences are very small but interpopulation differences purely increase in the cas of comensalism and effects of subspecies. Keywords: Mus musculus, comensalism, open fieldtest, Elevated plus-maze, Principal Component Analysis (PCA)
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Evaluation of the palate morphology in bilatelar cleft lip and palate clefts with palatolaly
Hamtilová, Martina ; Velemínská, Jana (advisor) ; Ivanov, Ilija Christo (referee)
The diploma work was based on the evaluation of dental casts of patients with bilateral cleft lip and palate (BCLP) with a mean age of 10. Patients consist of two groups, patients without defect in speech and with speech impairment (palatolaly). Palatolalies in the literature are primarily associated with velopharyngeal insufficiency. The study tested the working hypothesis that in the failure of speech is involved a different, specific in some way, palatal shape. Dental casts were scanned using a laser scanner and analyzed by 3-D geometric morphometry and multivariate statistics: principal component analysis (PCA), linear regression analysis and finite element analysis (FESA). Using linear regression it was found that the shape of the palate is affected in younger individuals by age, and so had to be 5 patients excluded for further analysis. Patients with palatolaly have lower variability the palatal shape than patients without palatolalie, so their palates are similar to each other and have a specific shape. Palates are wider and lower than in individuals without speech disorder and they have a characteristic deepening behind the anterior part of the palate. We assume that these features in palate morphology primarily the lower arch and the substantial deepening are most likely to affect the...
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Analysis of male sex pheromone of different population of tropic fruit fly Ceratitis capitata (Diptera, Tephritidae)
Ježková, Zuzana ; Bosáková, Zuzana (advisor) ; Jirošová, Anna (referee)
The Ceratitis capitata is a very important agricultural pest, whose reproduction behaviour is controled by chemical signals. Males initiate mating by creating leks, where they release sexual pheromones to attract females. The main goal of this diploma thesis was to determine the influence of host plants on the composition of male sex-pheromones C. capitata and to compare emanations of wild males with those originating from laboratory population. We studied the chemical composition of volatiles, released by calling males C. capitata from laboratory and two wild populations, using two-dimensional gas chromatography with time-of-flight mass spectrometric detection (GC×GC-TOFMS), gas chromatography with electroantennographic and flame ionization detection (GC-EAD-FID). All data were statistically analyzed by multivariate data analyses. Significant differences were observed in the quantitative and qualitative composition of the chemical emanations among males from the three populations. The GC-EAD-FID analyses revealed fourteen antenally active compounds with a possible behavioral function. Isomenthone, geraniol, bornyl acetate, geranyl acetone and ethyl octanoate were newly identified antenally active compounds of C. capitata male sex pheromone. Statistical analyses indicated that males and females of...
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